MCL.cpp File Reference

#include <mpi.h>
#include <stdint.h>
#include <sys/time.h>
#include <iostream>
#include <fstream>
#include <string>
#include <sstream>
#include <ctime>
#include <cmath>
#include "CombBLAS/CombBLAS.h"
#include "CC.h"
#include "WriteMCLClusters.h"

Include dependency graph for MCL.cpp:

Go to the source code of this file.

Classes
struct	HipMCLParam

Macros
#define	__STDC_CONSTANT_MACROS
#define	__STDC_LIMIT_MACROS
#define	EPS   0.0001

Functions
void	InitParam (HipMCLParam &param)
void	ShowParam (HipMCLParam &param)
void	ProcessParam (int argc, char *argv[], HipMCLParam &param)
void	ShowOptions ()
template<typename IT, typename NT, typename DER>
FullyDistVec< IT, IT >	Interpret (SpParMat< IT, NT, DER > &A)
template<typename IT, typename NT, typename DER>
void	MakeColStochastic (SpParMat< IT, NT, DER > &A)
template<typename IT, typename NT, typename DER>
void	MakeColStochastic3D (SpParMat3D< IT, NT, DER > &A3D)
template<typename IT, typename NT, typename DER>
NT	Chaos (SpParMat< IT, NT, DER > &A)
template<typename IT, typename NT, typename DER>
NT	Chaos3D (SpParMat3D< IT, NT, DER > &A3D)
template<typename IT, typename NT, typename DER>
void	Inflate (SpParMat< IT, NT, DER > &A, double power)
template<typename IT, typename NT, typename DER>
void	Inflate3D (SpParMat3D< IT, NT, DER > &A3D, double power)
template<typename IT, typename NT, typename DER>
void	AdjustLoops (SpParMat< IT, NT, DER > &A)
template<typename IT, typename NT, typename DER>
void	RemoveIsolated (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT, typename NT, typename DER>
void	RandPermute (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT, typename NT, typename DER>
FullyDistVec< IT, IT >	HipMCL (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT, typename NT, typename DER>
void	Symmetricize (SpParMat< IT, NT, DER > &A)
template<typename GIT, typename LIT, typename NT>
void	MainBody (HipMCLParam &param)
int	main (int argc, char *argv[])

Variables
double	mcl_symbolictime
double	mcl_Abcasttime
double	mcl_Bbcasttime
double	mcl_localspgemmtime
double	mcl_multiwaymergetime
double	mcl_kselecttime
double	mcl_prunecolumntime
double	mcl3d_conversiontime
double	mcl3d_symbolictime
double	mcl3d_Abcasttime
double	mcl3d_Bbcasttime
double	mcl3d_SUMMAtime
double	mcl3d_localspgemmtime
double	mcl3d_SUMMAmergetime
double	mcl3d_reductiontime
double	mcl3d_3dmergetime
double	mcl3d_kselecttime
int	cblas_splits
double	cblas_alltoalltime
double	cblas_allgathertime
double	cblas_localspmvtime
double	cblas_mergeconttime
double	cblas_transvectime
int64_t	mcl_memory
double	tIO

Macro Definition Documentation

__STDC_CONSTANT_MACROS

#define __STDC_CONSTANT_MACROS

Definition at line 34 of file MCL.cpp.

__STDC_LIMIT_MACROS

#define __STDC_LIMIT_MACROS

Definition at line 37 of file MCL.cpp.

EPS

#define EPS   0.0001

Definition at line 55 of file MCL.cpp.

Function Documentation

AdjustLoops()

template<typename IT, typename NT, typename DER>

void AdjustLoops

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 464 of file MCL.cpp.

Chaos()

template<typename IT, typename NT, typename DER>

NT Chaos

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 408 of file MCL.cpp.

Chaos3D()

template<typename IT, typename NT, typename DER>

NT Chaos3D

(

SpParMat3D< IT, NT, DER > &

A3D

)

Definition at line 424 of file MCL.cpp.

HipMCL()

template<typename IT, typename NT, typename DER>

FullyDistVec< IT, IT > HipMCL	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param )

Definition at line 515 of file MCL.cpp.

Inflate()

template<typename IT, typename NT, typename DER>

void Inflate	(	SpParMat< IT, NT, DER > &	A,
		double	power )

Definition at line 447 of file MCL.cpp.

Inflate3D()

template<typename IT, typename NT, typename DER>

void Inflate3D	(	SpParMat3D< IT, NT, DER > &	A3D,
		double	power )

Definition at line 453 of file MCL.cpp.

InitParam()

void InitParam

(

HipMCLParam &

param

)

Definition at line 129 of file MCL.cpp.

Interpret()

template<typename IT, typename NT, typename DER>

FullyDistVec< IT, IT > Interpret

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 373 of file MCL.cpp.

main()

int main	(	int	argc,
		char *	argv[] )

Definition at line 790 of file MCL.cpp.

MainBody()

template<typename GIT, typename LIT, typename NT>

void MainBody

(

HipMCLParam &

param

)

Definition at line 712 of file MCL.cpp.

MakeColStochastic()

template<typename IT, typename NT, typename DER>

void MakeColStochastic

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 390 of file MCL.cpp.

MakeColStochastic3D()

template<typename IT, typename NT, typename DER>

void MakeColStochastic3D

(

SpParMat3D< IT, NT, DER > &

A3D

)

Definition at line 398 of file MCL.cpp.

ProcessParam()

void ProcessParam	(	int	argc,
		char *	argv[],
		HipMCLParam &	param )

Definition at line 233 of file MCL.cpp.

RandPermute()

template<typename IT, typename NT, typename DER>

void RandPermute	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param )

Definition at line 497 of file MCL.cpp.

RemoveIsolated()

template<typename IT, typename NT, typename DER>

void RemoveIsolated	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param )

Definition at line 477 of file MCL.cpp.

ShowOptions()

void ShowOptions

(

)

Definition at line 312 of file MCL.cpp.

ShowParam()

void ShowParam

(

HipMCLParam &

param

)

Definition at line 166 of file MCL.cpp.

Symmetricize()

template<typename IT, typename NT, typename DER>

void Symmetricize

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 700 of file MCL.cpp.

Variable Documentation

cblas_allgathertime

double cblas_allgathertime

Definition at line 80 of file MCL.cpp.

cblas_alltoalltime

double cblas_alltoalltime

Definition at line 79 of file MCL.cpp.

cblas_localspmvtime

double cblas_localspmvtime

Definition at line 81 of file MCL.cpp.

cblas_mergeconttime

double cblas_mergeconttime

Definition at line 82 of file MCL.cpp.

cblas_splits

int cblas_splits

Definition at line 78 of file MCL.cpp.

cblas_transvectime

double cblas_transvectime

Definition at line 83 of file MCL.cpp.

mcl3d_3dmergetime

double mcl3d_3dmergetime

Definition at line 74 of file MCL.cpp.

mcl3d_Abcasttime

double mcl3d_Abcasttime

Definition at line 68 of file MCL.cpp.

mcl3d_Bbcasttime

double mcl3d_Bbcasttime

Definition at line 69 of file MCL.cpp.

mcl3d_conversiontime

double mcl3d_conversiontime

Definition at line 66 of file MCL.cpp.

mcl3d_kselecttime

double mcl3d_kselecttime

Definition at line 75 of file MCL.cpp.

mcl3d_localspgemmtime

double mcl3d_localspgemmtime

Definition at line 71 of file MCL.cpp.

mcl3d_reductiontime

double mcl3d_reductiontime

Definition at line 73 of file MCL.cpp.

mcl3d_SUMMAmergetime

double mcl3d_SUMMAmergetime

Definition at line 72 of file MCL.cpp.

mcl3d_SUMMAtime

double mcl3d_SUMMAtime

Definition at line 70 of file MCL.cpp.

mcl3d_symbolictime

double mcl3d_symbolictime

Definition at line 67 of file MCL.cpp.

mcl_Abcasttime

double mcl_Abcasttime

Definition at line 58 of file MCL.cpp.

mcl_Bbcasttime

double mcl_Bbcasttime

Definition at line 59 of file MCL.cpp.

mcl_kselecttime

double mcl_kselecttime

Definition at line 62 of file MCL.cpp.

mcl_localspgemmtime

double mcl_localspgemmtime

Definition at line 60 of file MCL.cpp.

mcl_memory

int64_t mcl_memory

Definition at line 85 of file MCL.cpp.

mcl_multiwaymergetime

double mcl_multiwaymergetime

Definition at line 61 of file MCL.cpp.

mcl_prunecolumntime

double mcl_prunecolumntime

Definition at line 63 of file MCL.cpp.

mcl_symbolictime

double mcl_symbolictime

Definition at line 57 of file MCL.cpp.

tIO

double tIO

Definition at line 86 of file MCL.cpp.